Get the summary of the prediction results
# S3 method for tbl_deepredeff
summary(object, ...)Results of prediction from deepredeff::predict_effector().
Additional arguments ignored.
# \donttest{
# FASTA input
input_fasta <- system.file("extdata/example/fungi_sample.fasta", package = "deepredeff")
pred_result <- deepredeff::predict_effector(
input = input_fasta,
taxon = "fungi"
)
#> List of 22
#> $ python : chr "/usr/bin/python3"
#> $ libpython : chr "/usr/lib/python3.10/config-3.10-x86_64-linux-gnu/libpython3.10.so"
#> $ pythonhome : chr "//usr://usr"
#> $ pythonpath : chr "/home/runner/work/_temp/Library/reticulate/config:/usr/lib/python310.zip:/usr/lib/python3.10:/usr/lib/python3.1"| __truncated__
#> $ prefix : chr "/usr"
#> $ exec_prefix : chr "/usr"
#> $ base_exec_prefix : chr "/usr"
#> $ virtualenv : chr ""
#> $ virtualenv_activate : chr ""
#> $ executable : chr "/usr/bin/python3"
#> $ base_executable : chr "/usr/bin/python3"
#> $ version_string : chr "3.10.12 (main, Jun 11 2023, 05:26:28) [GCC 11.4.0]"
#> $ version : chr "3.10"
#> $ architecture : chr "64bit"
#> $ anaconda : logi FALSE
#> $ conda : chr "False"
#> $ numpy : NULL
#> $ required_module : chr "tensorflow"
#> $ required_module_path: NULL
#> $ available : logi TRUE
#> $ python_versions : chr [1:2] "/usr/bin/python3" "/usr/bin/python"
#> $ forced : NULL
#> - attr(*, "class")= chr "py_config"
#> Error: Python module tensorflow.keras was not found.
#>
#> Detected Python configuration:
#>
#>
summary(pred_result)
#> Error in eval(expr, envir, enclos): object 'pred_result' not found
# }