Calculate distance between sample data before and after registration
Source:R/calculate_distance.R
calculate_between_sample_distance.Rd
Calculate distance between sample data before and after registration
Usage
calculate_between_sample_distance(
registration_results,
gene_col = "locus_name",
compare_ref_vs_transform = TRUE,
accession_data_ref
)
Arguments
- registration_results
Result of registration process using
scale_and_register_data
.- gene_col
Column name of gene accession, default is
locus_name
.- compare_ref_vs_transform
If
TRUE
, the default, only comparison between reference data and data to transform is considered.- accession_data_ref
Accession name of reference data.
Value
This function returns a list of data frames which includes:
- distance_mean_df
distance of mean expression values.
- distance_scaled_mean_df
distance of scaled mean expression (all genes).
- distance_scaled_mean_df_only_nonreg
distance of scaled mean expression (only non-registered genes).
- distance_scaled_mean_df_only_reg
distance of scaled mean expression (only registered genes).
- distance_registered_df
distance of registered & scaled mean expression (all genes).
- distance_registered_df_only_reg
distance of registered & scaled mean expression (only registered genes).