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Prepare data

get_expression_of_interest()
Get expression of interest
get_mean_data()
Calculate mean expression values from all expression data with replicates

Process data

get_approximate_stretch()
Get approximate stretch factor
scale_and_register_data()
Register or synchronize different expression profiles
optimise_registration_params()
Optimise registration parameters with Simulated Annealing

Summarise and visualise registration results

summary_model_comparison()
Summarise registration results
calculate_between_sample_distance()
Calculate distance between sample data before and after registration
plot_registration_results()
Plot gene of interest after registration
plot_heatmap()
Visualise distances between samples from different time points