Function reference • greatR

Prepare data

get_expression_of_interest(): Get expression of interest

get_mean_data(): Calculate mean expression values from all expression data with replicates

Process data

get_approximate_stretch(): Get approximate stretch factor

scale_and_register_data(): Register or synchronize different expression profiles

optimise_registration_params(): Optimise registration parameters with Simulated Annealing

Summarise and visualise registration results

summary_model_comparison(): Summarise registration results

calculate_between_sample_distance(): Calculate distance between sample data before and after registration

plot_registration_results(): Plot gene of interest after registration

plot_heatmap(): Visualise distances between samples from different time points