Get expression of interest

Usage

get_expression_of_interest(
  data_ref,
  data_to_transform,
  id_table,
  lookup_col_ref_and_id_table = "CDS.model",
  lookup_col_ref_and_to_transform = "locus_name",
  colnames_wanted = NULL,
  tissue_wanted = NULL,
  gene_of_interest_acc,
  sum_exp_data_ref = FALSE,
  accession_data_to_transform = "Col0"
)

Arguments

data_ref: Data frame of reference data.
data_to_transform: Data frame of data to transform.
id_table: Data frame of ID table connecting both reference data and data to transform.
lookup_col_ref_and_id_table: Column names shared by both reference data and ID table.
lookup_col_ref_and_to_transform: Column names shared by both reference data and data to transform.
colnames_wanted: List of column names to keep from both reference data and data to transform.
tissue_wanted: Name of tissue from which data will be compared.
gene_of_interest_acc: Gene accession list from data to transform.
sum_exp_data_ref: If TRUE then sum all gene data. Default is FALSE.
accession_data_to_transform: Accession name of data which will be transformed.

Value

A data frame contains both reference data and data to transform for selected gene of interest.